# Generated by roxygen2: do not edit by hand

export(bam_to_bigwig)
export(bam_to_junctions)
export(get_coverage)
export(install_megadepth)
export(megadepth_cmd)
export(megadepth_shell)
export(process_junction_table)
export(read_coverage)
export(read_coverage_table)
export(read_junction_table)
importFrom(GenomicRanges,GRanges)
importFrom(cmdfun,cmd_args_dots)
importFrom(cmdfun,cmd_list_interp)
importFrom(cmdfun,cmd_list_to_flags)
importFrom(dplyr,arrange)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(fs,dir_exists)
importFrom(magrittr,"%>%")
importFrom(readr,cols)
importFrom(readr,read_delim)
importFrom(utils,download.file)
importFrom(utils,file_test)
importFrom(xfun,is_macos)
importFrom(xfun,is_windows)
importFrom(xfun,same_path)
